Gluten-Free Pumpkin Muffins

Prep 10 minutes
Cook 25 minutes
Servings 12 muffins

If you’re going to make any seasonal treat this fall, make it these gluten-free pumpkin muffins! This no-fuss recipe is all I’ve been craving lately, and my family are huge fans too. They’re moist, perfectly spiced, and have a deliciously fluffy texture with a beautiful golden-brown top. I use real pumpkin puree and gluten-free flour, which packs these muffins with autumnal flavor and keeps them totally gluten-free. This recipe is also naturally dairy-free!

Gluten-free pumpkin muffins

Gluten-Free Pumpkin Muffins Recipe

These muffins are soft and tender like our gluten-free pumpkin bread but handheld like these gluten-free pumpkin cookies—the best of both worlds! I spice the batter with cinnamon, nutmeg, and ground ginger to give these gluten-free pumpkin muffins that classic pumpkin spice flavor. Then, the eggs, vegetable oil, and two types of sugar (granulated and brown) make the muffins super moist, with just the right amount of sweetness. They’re easy to make and freeze beautifully, too! I always warm mine up in the microwave for a few seconds to have with my morning coffee.

Ingredients

  • Gluten-Free All-Purpose Flour with Xanthan Gum: Use a 1:1 gluten-free all-purpose flour blend that includes xanthan gum for the best texture. We like Pillsbury gluten-free flour. Not all flours are created equal, and you may experience different results depending on the brand you use. If your flour doesn’t contain xanthan gum, I recommend adding ½ teaspoon of xanthan gum to the dry ingredients.
  • Baking Powder & Baking Soda: Makes these GF pumpkin muffins nice and fluffy. Always double-check the labels on your baking powder and baking soda to ensure they’re gluten-free, as some brands may have cross-contamination risks.
  • Spices: I use cinnamon, nutmeg, and ground ginger for a lightly spiced flavor that isn’t overpowering. You can also use 2 ½ teaspoons of pumpkin pie spice instead of the individual spices.
  • Vegetable Oil: Provides moisture and helps keep these muffins soft. Use a neutral-flavored vegetable oil, like canola oil. Melted coconut oil and even melted unsalted butter will work, but they’ll add a slightly different flavor.
  • Brown Sugar & Granulated Sugar: A combination of brown and granulated sugar gives these gluten-free pumpkin muffins just the right amount of sweetness. The molasses in the brown sugar also adds depth of flavor and color.
  • Canned Pumpkin Puree: Don’t accidentally buy pumpkin pie filling! You want 100% pure pumpkin puree for this recipe. You can also make your own pumpkin puree from fresh pumpkins if you’d prefer. I’ve included instructions on how to do that below.
  • Eggs: Use large eggs to bind the ingredients together. The eggs also help the muffins to rise.
  • Vanilla Extract: Adds a lovely warmth and flavor to the batter.
  • Salt: For flavor enhancement.
Ingredients for gluten-free pumpkin muffins

Tips and Suggestions

  • Xanthan gum is an important ingredient in gluten-free baking. It mimics the gluten in traditional flour and creates a similar texture. That’s why I recommend using an all-purpose gluten-free flour that already includes xanthan gum. But don’t worry if your flour doesn’t have it; you can just add ½ teaspoon of xanthan gum to this recipe.
  • Make sure your oven is set to 350°F (175°C) and fully preheated before baking the muffins. The high temperature helps the muffins to rise and creates the beautiful cracked tops you see in my photos!
  • Let your muffins cool for 5 minutes in the muffin tin before removing them. This helps them to set and stops them from falling apart. However, I don’t recommend letting them cool completely in the tin because they might get soggy. Move them to a wire rack to cool after 5 minutes.
  • Be careful not to overmix the batter. This can result in tough and dense muffins. Mix just until all the ingredients are incorporated.
  • A greased cookie scoop can help you portion the batter evenly into the muffin tin.

Can I Use Fresh Pumpkin Puree Instead of Canned Pumpkin Puree?

Yes, you can! Here’s how to prepare fresh pumpkin puree for this recipe:

  1. Wash your pumpkin and slice it in half (pie or sugar pumpkins work best).
  2. Remove the seeds and stringy bits.
  3. Place the pumpkin halves on a baking sheet, cut side down.
  4. Roast in a 375°F (190°C) oven for 45 minutes to an hour or until the flesh is easily pierced with a fork.
  5. Scoop out the flesh and blend it in a food processor until smooth.
  6. Strain the puree through a fine mesh sieve to remove any excess liquid. It should match the consistency of canned pumpkin.
  7. Once strained, measure out the amount needed to make these muffins. Any extra puree can be used in other recipes or frozen for later.
Overhead view of gluten-free pumpkin muffins

Why Are My Muffins Dense?

Make sure not to overmix the batter, as this can cause your GF pumpkin muffins to be dense. Also, check that your baking powder and baking soda are fresh, as expired leavening agents can affect the texture.

What Else Can I Add?

I sometimes make these spiced pumpkin gluten-free muffins with chocolate chips, which is delicious! After combining the wet and dry ingredients, I fold in ½ to 1 cup of chocolate chips. You can also add chopped nuts or dried fruit to the batter if you like. Just don’t add more than a cup’s worth of additional ingredients, or the batter may become too heavy and not rise properly.

Storage Instructions

Store these homemade gluten-free pumpkin muffins in an airtight container at room temperature for up to 3 days. For longer storage, you can freeze them for up to 3 months. Thaw at room temperature before eating.

A gluten-free pumpkin muffins sliced in half.

More Gluten-Free Pumpkin Recipes to Try!

4.91 from 70 votes

Gluten-Free Pumpkin Muffins Recipe

Servings: 12 muffins
Prep: 10 minutes
Cook: 25 minutes
Total: 35 minutes
Close up of gluten-free pumpkin muffins
These gluten-free pumpkin muffins are moist, perfectly spiced, and have a deliciously fluffy texture. The best treat to make this fall!
Step-by-step photos can be seen below the recipe card.
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Ingredients 

  • 1 ¾ cups gluten-free all-purpose flour with xanthan gum
  • 1 ½ teaspoons baking powder
  • ½ teaspoon baking soda
  • 2 teaspoons cinnamon
  • ½ teaspoon salt
  • ¼ teaspoon nutmeg
  • ¼ teaspoon ground ginger
  • 2 large eggs
  • cup packed dark brown sugar
  • ½ cup sugar
  • ½ cup vegetable oil
  • 1 teaspoon vanilla extract
  • 1 ¼ cups canned pumpkin puree
[adthrive-in-post-video-player video-id=”5ypx0PEt” upload-date=”2020-10-23T13:53:35.000Z” name=” Gluten-Free Pumpkin Crumb Muffins (Dairy-Free Option)” description=”Gluten-Free Pumpkin Crumb Muffins. Soft and moist gluten-free pumpkin muffins with a brown sugar crumb topping and vanilla maple glaze. The recipe also includes a dairy-free option.”]

Instructions 

  • Preheat oven to 350°F (175°C). Line a muffin pan with 12 paper liners or lightly grease it.
  • In a large bowl, whisk together gluten-free all-purpose flour, baking powder, baking soda, cinnamon, salt, nutmeg, and ground ginger.
  • In a separate bowl, whisk together the eggs, brown sugar, sugar, oil, and vanilla extract.
  • Whisk the pumpkin puree into the wet ingredients.
  • Gradually add wet ingredients to dry ingredients, mixing until combined.
  • Divide batter evenly into muffin cups, filling each almost full.
  • Bake for 18-22 minutes or until a toothpick inserted into the center comes out clean.
  • Cool in the tin for 5 minutes, then transfer to a wire rack to cool completely.

Notes

  • If your gluten-free flour blend doesn’t already contain xanthan gum, add ½ teaspoon of xanthan gum to this recipe when combining the dry ingredients.
  • To Store: Keep in an airtight container at room temperature for up to 3 days.
  • To Freeze: Wrap in plastic wrap and place in a freezer-safe bag or container. Freeze them for up to 3 months and thaw at room temperature.
  • Mama says, “Check all of your labels!”

Nutrition

Serving: 1muffinCalories: 240kcalCarbohydrates: 36gProtein: 3gFat: 11gSaturated Fat: 2gPolyunsaturated Fat: 5gMonounsaturated Fat: 2gTrans Fat: 0.1gCholesterol: 31mgSodium: 212mgPotassium: 83mgFiber: 3gSugar: 22gVitamin A: 4018IUVitamin C: 1mgCalcium: 66mgIron: 1mg

Nutrition information is automatically calculated, so should only be used as an approximation.

Additional Info

Course: Dessert
Cuisine: American
Tried this recipe?Mention @mamaknowsglutenfree or tag #mamaknowsglutenfree!

How to Make Gluten-Free Pumpkin Muffins Step-by-Step

Dry ingredients for gluten-free pumpkin muffins in a bowl.

Preheat oven to 350°F. Line a muffin pan with 12 paper liners or lightly grease it. In a large bowl, whisk together 1 ¾ cups gluten-free all-purpose flour, 1 ½ teaspoons baking powder, ½ teaspoon baking soda, 2 teaspoons cinnamon, ½ teaspoon salt, ¼ teaspoon nutmeg, and ¼ teaspoon ground ginger.

Brown sugar and oil mixed together for gluten-free pumpkin muffins in a glass mixing bowl.

In a separate bowl, whisk together 2 large eggs, ⅔ cup brown sugar, ½ cup sugar, ½ cup oil, and 1 teaspoon vanilla extract. 

Wet ingredients for gluten-free pumpkin muffins combined in a glass mixing bowl.

Whisk 1 ¼ cups pumpkin puree into the wet ingredients.

Gluten-free pumpkin muffin batter.

Gradually add wet ingredients to dry ingredients, mixing until combined.

Gluten-free pumpkin muffin batter in a muffin tin.

Divide batter evenly into muffin cups, filling each almost full.

Freshly baked gluten-free pumpkin muffins in a muffin tin.

Bake for 18-22 minutes or until a toothpick inserted into the center comes out clean. Cool in the tin for 5 minutes, then transfer to a wire rack to cool completely.

About Sabine Venier

Originally from Austria and now living in the UK, Sabine Venier brings her love of homemade gluten-free cooking to Mama Knows Gluten Free.

She’s a recipe developer and food photographer whose work has been featured in places like Forbes, Parade, and Rachael Ray Everyday. Sabine is also the author of The Chocolate Addict’s Baking Book, and she loves sharing practical, easy-to-follow recipes that make gluten-free cooking feel doable (and delicious) for everyone.

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4.91 from 70 votes
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Colleen
April 17, 2026 12:54 pm

These are the most delicious gluten free muffins! Have had them for multiple showers and everyone raves about them! Would love to know the change in temp and baking time to convert them to mini muffins without drying them out 🙂

Amy - Mama Knows Gluten Free
April 22, 2026 1:44 pm
Reply to  Colleen

Hi Colleen, Thank you! Bake around 10-14 minutes for mini muffins. Start checking around 10 minutes for doneness.

Caroline Ward
December 28, 2025 12:49 pm

These are so amazing and delicious!! You can’t even tell they are gluten free. Thank you for making my life a little happier with this recipe!! Highly recommend!!

Sherra Still
December 2, 2025 1:21 pm

What a treat to prepare these muffins! We enjoyed them right out of the oven, and as the butter melted, we bit into them and thought, just maybe, I will be alright with Celiac Disease! ☺️ Thank you!

Susan Ballard
November 29, 2025 1:43 pm

I made this for Thanksgiving and everyone liked them. When I make them again I will add more spices. I enjoyed the few remaining I had for breakfast with my coffee.

Morgan
November 17, 2025 11:20 am

Hi! Is there a way to substitute using a pumpkin pie spice blend in this recipe? Thank you!

Amy - Mama Knows Gluten Free
November 17, 2025 6:24 pm
Reply to  Morgan

Hi Morgan, yes you can use 2½ teaspoons of pumpkin pie spice instead of the individual spices.

Fiona
November 16, 2025 5:53 pm

My child is recently diagnosed with CD and I tried these – it was an absolute hit!! Thank you so much from the bottom of this tired mama’s heart. God bless you!

HDR
November 14, 2025 5:38 pm

These just don’t taste good. They came out way too fluffy, not like muffins 🙁

Amy - Mama Knows Gluten Free
November 17, 2025 5:53 pm
Reply to  HDR

Sorry these didn’t turn out for you.

Dieter
November 11, 2025 4:12 pm

We make these all of the time. Great recipe. Make sure you use fresh flour and baking soda. The walnuts make this REALLY awesome. I prepare them by slicing them in half, then crisping them on a pan with butter. Heavenly.

Wendy Mitchell
November 8, 2025 5:07 pm

Great recipe. I also added in blueberries, strawberries and some currents. Took longer to bake but so tasty. Than you.

Jojo
November 5, 2025 2:01 pm

These muffins are terrific. Not to spice just right!
Making them for a relative who has celiac but keeping a few for me because they are so good.