Gluten-Free Pumpkin Muffins
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If you’re going to make any seasonal treat this fall, make it these gluten-free pumpkin muffins! This no-fuss recipe is all I’ve been craving lately, and my family are huge fans too. They’re moist, perfectly spiced, and have a deliciously fluffy texture with a beautiful golden-brown top. I use real pumpkin puree and gluten-free flour, which packs these muffins with autumnal flavor and keeps them totally gluten-free. This recipe is also naturally dairy-free!

Gluten-Free Pumpkin Muffins Recipe
These muffins are soft and tender like our gluten-free pumpkin bread but handheld like these gluten-free pumpkin cookies—the best of both worlds! I spice the batter with cinnamon, nutmeg, and ground ginger to give these gluten-free pumpkin muffins that classic pumpkin spice flavor. Then, the eggs, vegetable oil, and two types of sugar (granulated and brown) make the muffins super moist, with just the right amount of sweetness. They’re easy to make and freeze beautifully, too! I always warm mine up in the microwave for a few seconds to have with my morning coffee.
Ingredients
- Gluten-Free All-Purpose Flour with Xanthan Gum: Use a 1:1 gluten-free all-purpose flour blend that includes xanthan gum for the best texture. We like Pillsbury gluten-free flour. Not all flours are created equal, and you may experience different results depending on the brand you use. If your flour doesn’t contain xanthan gum, I recommend adding ½ teaspoon of xanthan gum to the dry ingredients.
- Baking Powder & Baking Soda: Makes these GF pumpkin muffins nice and fluffy. Always double-check the labels on your baking powder and baking soda to ensure they’re gluten-free, as some brands may have cross-contamination risks.
- Spices: I use cinnamon, nutmeg, and ground ginger for a lightly spiced flavor that isn’t overpowering. You can also use 2 ½ teaspoons of pumpkin pie spice instead of the individual spices.
- Vegetable Oil: Provides moisture and helps keep these muffins soft. Use a neutral-flavored vegetable oil, like canola oil. Melted coconut oil and even melted unsalted butter will work, but they’ll add a slightly different flavor.
- Brown Sugar & Granulated Sugar: A combination of brown and granulated sugar gives these gluten-free pumpkin muffins just the right amount of sweetness. The molasses in the brown sugar also adds depth of flavor and color.
- Canned Pumpkin Puree: Don’t accidentally buy pumpkin pie filling! You want 100% pure pumpkin puree for this recipe. You can also make your own pumpkin puree from fresh pumpkins if you’d prefer. I’ve included instructions on how to do that below.
- Eggs: Use large eggs to bind the ingredients together. The eggs also help the muffins to rise.
- Vanilla Extract: Adds a lovely warmth and flavor to the batter.
- Salt: For flavor enhancement.

Tips and Suggestions
- Xanthan gum is an important ingredient in gluten-free baking. It mimics the gluten in traditional flour and creates a similar texture. That’s why I recommend using an all-purpose gluten-free flour that already includes xanthan gum. But don’t worry if your flour doesn’t have it; you can just add ½ teaspoon of xanthan gum to this recipe.
- Make sure your oven is set to 350°F (175°C) and fully preheated before baking the muffins. The high temperature helps the muffins to rise and creates the beautiful cracked tops you see in my photos!
- Let your muffins cool for 5 minutes in the muffin tin before removing them. This helps them to set and stops them from falling apart. However, I don’t recommend letting them cool completely in the tin because they might get soggy. Move them to a wire rack to cool after 5 minutes.
- Be careful not to overmix the batter. This can result in tough and dense muffins. Mix just until all the ingredients are incorporated.
- A greased cookie scoop can help you portion the batter evenly into the muffin tin.
Can I Use Fresh Pumpkin Puree Instead of Canned Pumpkin Puree?
Yes, you can! Here’s how to prepare fresh pumpkin puree for this recipe:
- Wash your pumpkin and slice it in half (pie or sugar pumpkins work best).
- Remove the seeds and stringy bits.
- Place the pumpkin halves on a baking sheet, cut side down.
- Roast in a 375°F (190°C) oven for 45 minutes to an hour or until the flesh is easily pierced with a fork.
- Scoop out the flesh and blend it in a food processor until smooth.
- Strain the puree through a fine mesh sieve to remove any excess liquid. It should match the consistency of canned pumpkin.
- Once strained, measure out the amount needed to make these muffins. Any extra puree can be used in other recipes or frozen for later.

Why Are My Muffins Dense?
Make sure not to overmix the batter, as this can cause your GF pumpkin muffins to be dense. Also, check that your baking powder and baking soda are fresh, as expired leavening agents can affect the texture.
What Else Can I Add?
I sometimes make these spiced pumpkin gluten-free muffins with chocolate chips, which is delicious! After combining the wet and dry ingredients, I fold in ½ to 1 cup of chocolate chips. You can also add chopped nuts or dried fruit to the batter if you like. Just don’t add more than a cup’s worth of additional ingredients, or the batter may become too heavy and not rise properly.
Storage Instructions
Store these homemade gluten-free pumpkin muffins in an airtight container at room temperature for up to 3 days. For longer storage, you can freeze them for up to 3 months. Thaw at room temperature before eating.

More Gluten-Free Pumpkin Recipes to Try!
- Gluten-Free Pumpkin Pie
- Almond Flour Pumpkin Bread
- Gluten-Free Pumpkin Donuts
- Gluten-Free Pumpkin Pancakes
- Gluten-Free Pumpkin Waffles
Gluten-Free Pumpkin Muffins Recipe

Ingredients
- 1 ¾ cups gluten-free all-purpose flour with xanthan gum
- 1 ½ teaspoons baking powder
- ½ teaspoon baking soda
- 2 teaspoons cinnamon
- ½ teaspoon salt
- ¼ teaspoon nutmeg
- ¼ teaspoon ground ginger
- 2 large eggs
- ⅔ cup packed dark brown sugar
- ½ cup sugar
- ½ cup vegetable oil
- 1 teaspoon vanilla extract
- 1 ¼ cups canned pumpkin puree
Instructions
- Preheat oven to 350°F (175°C). Line a muffin pan with 12 paper liners or lightly grease it.
- In a large bowl, whisk together gluten-free all-purpose flour, baking powder, baking soda, cinnamon, salt, nutmeg, and ground ginger.
- In a separate bowl, whisk together the eggs, brown sugar, sugar, oil, and vanilla extract.
- Whisk the pumpkin puree into the wet ingredients.
- Gradually add wet ingredients to dry ingredients, mixing until combined.
- Divide batter evenly into muffin cups, filling each almost full.
- Bake for 18-22 minutes or until a toothpick inserted into the center comes out clean.
- Cool in the tin for 5 minutes, then transfer to a wire rack to cool completely.
Notes
- If your gluten-free flour blend doesn’t already contain xanthan gum, add ½ teaspoon of xanthan gum to this recipe when combining the dry ingredients.
- To Store: Keep in an airtight container at room temperature for up to 3 days.
- To Freeze: Wrap in plastic wrap and place in a freezer-safe bag or container. Freeze them for up to 3 months and thaw at room temperature.
- Mama says, “Check all of your labels!”
Nutrition
Nutrition information is automatically calculated, so should only be used as an approximation.
How to Make Gluten-Free Pumpkin Muffins Step-by-Step

Preheat oven to 350°F. Line a muffin pan with 12 paper liners or lightly grease it. In a large bowl, whisk together 1 ¾ cups gluten-free all-purpose flour, 1 ½ teaspoons baking powder, ½ teaspoon baking soda, 2 teaspoons cinnamon, ½ teaspoon salt, ¼ teaspoon nutmeg, and ¼ teaspoon ground ginger.

In a separate bowl, whisk together 2 large eggs, ⅔ cup brown sugar, ½ cup sugar, ½ cup oil, and 1 teaspoon vanilla extract.

Whisk 1 ¼ cups pumpkin puree into the wet ingredients.

Gradually add wet ingredients to dry ingredients, mixing until combined.

Divide batter evenly into muffin cups, filling each almost full.

Bake for 18-22 minutes or until a toothpick inserted into the center comes out clean. Cool in the tin for 5 minutes, then transfer to a wire rack to cool completely.













These are the most delicious gluten free muffins! Have had them for multiple showers and everyone raves about them! Would love to know the change in temp and baking time to convert them to mini muffins without drying them out 🙂
Hi Colleen, Thank you! Bake around 10-14 minutes for mini muffins. Start checking around 10 minutes for doneness.
These are so amazing and delicious!! You can’t even tell they are gluten free. Thank you for making my life a little happier with this recipe!! Highly recommend!!
What a treat to prepare these muffins! We enjoyed them right out of the oven, and as the butter melted, we bit into them and thought, just maybe, I will be alright with Celiac Disease! ☺️ Thank you!
I made this for Thanksgiving and everyone liked them. When I make them again I will add more spices. I enjoyed the few remaining I had for breakfast with my coffee.
Hi! Is there a way to substitute using a pumpkin pie spice blend in this recipe? Thank you!
Hi Morgan, yes you can use 2½ teaspoons of pumpkin pie spice instead of the individual spices.
My child is recently diagnosed with CD and I tried these – it was an absolute hit!! Thank you so much from the bottom of this tired mama’s heart. God bless you!
These just don’t taste good. They came out way too fluffy, not like muffins 🙁
Sorry these didn’t turn out for you.
We make these all of the time. Great recipe. Make sure you use fresh flour and baking soda. The walnuts make this REALLY awesome. I prepare them by slicing them in half, then crisping them on a pan with butter. Heavenly.
Great recipe. I also added in blueberries, strawberries and some currents. Took longer to bake but so tasty. Than you.
These muffins are terrific. Not to spice just right!
Making them for a relative who has celiac but keeping a few for me because they are so good.